Finally, we note that there is a fourth, smaller peak at m/z 1194 in the MALDI-TOF spectrum (Figure 2A), which may correspond to a cyclized form of this larger pyoverdine species. Table 3 Negative ions arising from MS/MS analysis of the m/z = 1141 pyoverdine species Peak number Mass Composition of ion 1 357.13 B ion: CHR 2 458.24 B ion: CHR_K 3 616.28 B ion: CHR_K_OH-D 4 718.32 B ion: CHR_K_OH-D_T 5 818.39 B PHA-848125 concentration ion: CHR_K_OH-D_T_T 6 905.42 B ion: CHR_K_OH-D_T_T_S 7 1036.41 B ion: CHR_K_OH-D_T_T_S_OH-D Y1 1067.48 Y ion resulting from loss of chromophore acyl group Fragmentation of the m/z = 1141 pyoverdine species resulted in identification of the following negative ions as
shown in Figure 2B. Peaks 1-7 match the expected pattern of B-ions previously reported for fragmentation of other P. syringae linear pyoverdine molecules. Y1 has the expected mass for the Y ion resulting from loss of the acyl group of the chromophore. CHR = chromophore, OH-D = hydroxyaspartate, all
other amino acids indicated by standard one letter code. Table 4 Negative ions arising from MS/MS analysis of the m/z = 1212 pyoverdine species Peak number Mass Mass difference with equivalent Bortezomib cost peak in Table 3 CHR 357.13 0 1 428.12 70.99 2 529.23 70.99 3 687.27 70.99 4 789.30 70.98 5 889.38 70.99 6 976.43 71.01 7 1107.40 70.99 Y1 1138.47 70.99 Fragmentation of the m/z = 1212 pyoverdine species resulted in identification of the following negative ions as shown in Figure 2C. The numbering and spacing of ions is identical to those listed in Table 3, but with peak 1 now representing the chromophore bearing an unknown 71 Da substituent. Y1 has the expected mass for the Y ion resulting from loss of the acyl group of the chromophore (allowing for the unknown Dynein 71 Da substituent). I BET 762 Genetic and biochemical analysis of the pyoverdine NRPS genes To confirm that each
of the putative pyoverdine NRPS genes was indeed required for pyoverdine biosynthesis, these were individually deleted in-frame from the chromosome using a rapid overlap PCR-based method [37, 38]. When grown on iron-limiting King’s B (KB) media [39] each NRPS gene deletion strain lacked the UV fluorescence of wild type (WT) (Figure 3A). Likewise, each of the gene deletion strains was impaired in siderophore production, assessed following 24 h growth on CAS agar plates at 28°C (Figure 3B); and was unable to grow on KB agar plates containing 200 μg/ml EDDHA (ethylene-diamine-di-hydroxyphenylacetic acid, an iron chelating agent that establishes a strong selective pressure for effective siderophore-mediated iron transport; Figure 3C). These phenotypes confirmed that none of the gene deletion strains were able to produce pyoverdine. Successful restoration of pyoverdine synthesis by complementation in trans indicated that these phenotypes did not result from polar effects.